3D structure

PDB id
4V5E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Insights into translational termination from the structure of RF2 bound to the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.45 Å

Loop

Sequence
CGAUAACG
Length
8 nucleotides
Bulged bases
4V5E|1|DA|U|958, 4V5E|1|DA|C|961
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5E_175 not in the Motif Atlas
Homologous match to HL_7RQB_027
Geometric discrepancy: 0.0916
The information below is about HL_7RQB_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

4V5E|1|DA|C|955
4V5E|1|DA|G|956
4V5E|1|DA|A|957
4V5E|1|DA|U|958
4V5E|1|DA|A|959
4V5E|1|DA|A|960
4V5E|1|DA|C|961
4V5E|1|DA|G|962

Current chains

Chain DA
23S RIBOSOMAL RNA

Nearby chains

Chain DB
5S ribosomal RNA; 5S rRNA
Chain DQ
50S RIBOSOMAL PROTEIN L16

Coloring options:


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