HL_4V5E_178

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5E_178 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.2388

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V5E|1|DA|C|1092
4V5E|1|DA|G|1093
4V5E|1|DA|U|1094
4V5E|1|DA|A|1095
4V5E|1|DA|A|1096
4V5E|1|DA|U|1097
4V5E|1|DA|A|1098
4V5E|1|DA|G|1099

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CY

PEPTIDE CHAIN RELEASE FACTOR 2

Chain D9

50S RIBOSOMAL PROTEIN L36

Chain DH

50S RIBOSOMAL PROTEIN L6

Chain DK

50S RIBOSOMAL PROTEIN L11