HL_4V5E_192

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5E_192 not in the Motif Atlas

Homologous match to HL_9DFE_041

Geometric discrepancy: 0.5552

The information below is about HL_9DFE_041

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5E|1|DA|U|1720
4V5E|1|DA|G|1721
4V5E|1|DA|A|1722
4V5E|1|DA|U|1739
4V5E|1|DA|G|1740
4V5E|1|DA|A|1741
4V5E|1|DA|G|1742

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains