3D structure

PDB id
9DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
UGAUGAG
Length
7 nucleotides
Bulged bases
9DFE|1|1A|U|1739
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

9DFE|1|1A|U|1720
9DFE|1|1A|G|1721
9DFE|1|1A|A|1722
9DFE|1|1A|U|1739
9DFE|1|1A|G|1740
9DFE|1|1A|A|1741
9DFE|1|1A|G|1742

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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