HL_4V5E_236

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5E_236 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3349

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5E|1|DA|C|2142
4V5E|1|DA|C|2143
4V5E|1|DA|U|2144
4V5E|1|DA|C|2145
4V5E|1|DA|C|2146
4V5E|1|DA|G|2147
4V5E|1|DA|G|2148
4V5E|1|DA|G|2149

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CK

30S RIBOSOMAL PROTEIN S11