HL_4V5F_020

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5F_020 not in the Motif Atlas

Homologous match to HL_5J7L_020

Geometric discrepancy: 0.0785

The information below is about HL_5J7L_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5F|1|AA|C|897
4V5F|1|AA|G|898
4V5F|1|AA|C|899
4V5F|1|AA|A|900
4V5F|1|AA|A|901
4V5F|1|AA|G|902

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S RIBOSOMAL PROTEIN S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA