HL_4V5F_033
3D structure
- PDB id
- 4V5F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the ribosome with elongation factor G trapped in the post-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5F_033 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.1179
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
4V5F|1|AV|G|31
4V5F|1|AV|C|32
4V5F|1|AV|U|33
4V5F|1|AV|C|34
4V5F|1|AV|A|35
4V5F|1|AV|U|36
4V5F|1|AV|A|37
4V5F|1|AV|A|38
4V5F|1|AV|C|39
Current chains
- Chain AV
- E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S RIBOSOMAL PROTEIN S9
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AW
- Transfer RNA; tRNA
- Chain AX
- MRNA
- Chain AY
- ELONGATION FACTOR G
Coloring options: