HL_4V5F_039

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

4V5F|1|BA|U|90

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5F_039 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.335

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V5F|1|BA|C|87
4V5F|1|BA|G|88
4V5F|1|BA|G|89
4V5F|1|BA|U|90
4V5F|1|BA|A|92
4V5F|1|BA|G|93
4V5F|1|BA|C|94
4V5F|1|BA|G|94|||A
4V5F|1|BA|G|95

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S RIBOSOMAL PROTEIN L29

Chain BX

50S RIBOSOMAL PROTEIN L23

Chain BY

50S RIBOSOMAL PROTEIN L24