HL_4V5F_222

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCGACGAGG

Length

9 nucleotides

Bulged bases

4V5F|1|AA|C|470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5F_222 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.3698

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V5F|1|AA|C|457
4V5F|1|AA|C|458
4V5F|1|AA|G|460
4V5F|1|AA|A|461
4V5F|1|AA|C|470
4V5F|1|AA|G|471
4V5F|1|AA|A|472
4V5F|1|AA|G|473
4V5F|1|AA|G|474

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16