Motif HL_77082.1 Version HL_77082.1 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8CRE_036 | 8CRE | 0.7544 | 1 | 1 | LSU rRNA | G | 1676 | U | 1677 | U | 1678 | A | 1679 | U | 1680 | C | 1681 | U | 1682 | U | 1684 | cWW | ncwW | |||
| 2 | HL_8P9A_148 | 8P9A | 0.7467 | 1 | AR | LSU rRNA | G | 1680 | U | 1681 | U | 1682 | A | 1683 | U | 1684 | C | 1685 | U | 1686 | U | 1688 | cWW | ||||
| 3 | HL_7PMQ_003 | 7PMQ | 0.3171 | 0 | Anticodon loop related | F | RNA (42-MER) | G | 8 | U | 9 | U | 10 | U | 11 | C | 12 | G | 13 | A | 14 | C | 15 | cWW | |||
| 4 | HL_9DE7_001 | 9DE7 | 0.0000 | 0 | A | RNA (58-MER) | C | 29 | C | 30 | G | 31 | A | 32 | A | 33 | A | 34 | A | 35 | G | 36 | cWW | ntSH | |||
| 5 | HL_5UD5_002 | 5UD5 | 0.1886 | 1 | tRNA anticodon loop | C | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | ntSH | |
| 6 | HL_4V9F_032 | 4V9F | 0.2179 | 1 | Anticodon loop related | 0 | LSU rRNA | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH | |
| 7 | HL_1H3E_002 | 1H3E | 0.2970 | 1 | tRNA anticodon loop | B | tRNA | U | 31 | C | 32 | U | 33 | G | 34 | A | 36 | A | 37 | A | 38 | A | 39 | cWW | ncWB | ||
| 8 | HL_6UFM_004 | 6UFM | 0.5522 | 0 | Pseudoknot geometry | B | RNA (98-MER) | G | 13 | C | 14 | C | 15 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAUCUUU | 2 |
| GUUUCGAC | 1 |
| CCGAAAAG | 1 |
| ACUCUAAAU | 1 |
| ACUCAUACU | 1 |
| UCUGAAAA | 1 |
| GCCAUCAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAUCUU | 2 |
| UUUCGA | 1 |
| CGAAAA | 1 |
| CUCUAAA | 1 |
| CUCAUAC | 1 |
| CUG(PSU)AAA | 1 |
| CCAUCA | 1 |
- Annotations
-
- (3)
- tRNA anticodon loop (2)
- Anticodon loop related (2)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.48 | Max 0.91
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