HL_4V5G_011

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4V5G|1|AA|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_011 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3631

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4V5G|1|AA|C|418
4V5G|1|AA|C|419
4V5G|1|AA|U|420
4V5G|1|AA|U|421
4V5G|1|AA|C|422
4V5G|1|AA|G|423
4V5G|1|AA|G|424
4V5G|1|AA|G|425

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AC

30S RIBOSOMAL PROTEIN S3

Chain AD

30S RIBOSOMAL PROTEIN S4