HL_4V5G_032

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4V5G|1|AV|C|17, 4V5G|1|AV|G|18, 4V5G|1|AV|G|19, 4V5G|1|AV|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_032 not in the Motif Atlas

Homologous match to HL_3TUP_001

Geometric discrepancy: 0.2404

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

4V5G|1|AV|C|13
4V5G|1|AV|A|14
4V5G|1|AV|G|15
4V5G|1|AV|U|16
4V5G|1|AV|C|17
4V5G|1|AV|G|18
4V5G|1|AV|G|19
4V5G|1|AV|U|20
4V5G|1|AV|A|21
4V5G|1|AV|G|22

Current chains

Chain AV

E-SITE TRNA PHE OR P-SITE TRNA PHE

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S RIBOSOMAL PROTEIN L5