HL_4V5G_133

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGGUGAAAGCCUG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_133 not in the Motif Atlas

Homologous match to HL_5J7L_022

Geometric discrepancy: 0.4733

The information below is about HL_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06285.3

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V5G|1|CA|C|1008
4V5G|1|CA|G|1009
4V5G|1|CA|G|1010
4V5G|1|CA|G|1011
4V5G|1|CA|U|1012
4V5G|1|CA|G|1013
4V5G|1|CA|A|1014
4V5G|1|CA|A|1015
4V5G|1|CA|A|1016
4V5G|1|CA|G|1017
4V5G|1|CA|C|1018
4V5G|1|CA|C|1019
4V5G|1|CA|U|1020
4V5G|1|CA|G|1021

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains

Chain CN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain CS

30S RIBOSOMAL PROTEIN S19