HL_4V5G_151

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAG(5MU)(PSU)CGAAUCUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_151 not in the Motif Atlas

Homologous match to HL_5E81_248

Geometric discrepancy: 0.4729

The information below is about HL_5E81_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.3

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V5G|1|CY|C|51
4V5G|1|CY|A|52
4V5G|1|CY|G|53
4V5G|1|CY|5MU|54
4V5G|1|CY|PSU|55
4V5G|1|CY|C|56
4V5G|1|CY|G|57
4V5G|1|CY|A|58
4V5G|1|CY|A|59
4V5G|1|CY|U|60
4V5G|1|CY|C|61
4V5G|1|CY|U|62
4V5G|1|CY|G|63

Current chains

Chain CY

A-SITE TRNA THR

Nearby chains

Chain CZ

ELONGATION FACTOR TU-A

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DK

50S RIBOSOMAL PROTEIN L11