Motif HL_60848.1 Version HL_60848.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-4 | 3-10 | 4-10 | 5-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_072 | 7A0S | 0.0000 | 3 | X | LSU rRNA | G | 1503 | G | 1504 | U | 1505 | A | 1507 | G | 1508 | A | 1509 | A | 1510 | A | 1512 | C | 1514 | U | 1515 | A | 1516 | C | 1517 | cWW | cWW | ncWH | ncWW | ncWW | |
| 2 | HL_5E81_248 | 5E81 | 0.8409 | 1 | 3L | tRNA | A | 51 | G | 52 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | C | 62 | U | 63 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUCAGAAAAUCUAC | 1 |
| AGGUUCGAAUCCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCAGAAAAUCUA | 1 |
| GGUUCGAAUCC | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.84 | Avg 0.42 | Max 0.84
Coloring options: