HL_4V5G_209

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_209 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1886

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V5G|1|DA|G|2373
4V5G|1|DA|C|2374
4V5G|1|DA|G|2375
4V5G|1|DA|A|2376
4V5G|1|DA|A|2377
4V5G|1|DA|A|2378
4V5G|1|DA|G|2379
4V5G|1|DA|C|2380

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D6

50S RIBOSOMAL PROTEIN L33

Chain DS

50S RIBOSOMAL PROTEIN L18