HL_4V5G_237

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGUGAGAAUCCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_237 not in the Motif Atlas

Geometric match to HL_5EL4_250

Geometric discrepancy: 0.3977

The information below is about HL_5EL4_250

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25222.2

Basepair signature

cWW-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V5G|1|BA|G|1279
4V5G|1|BA|G|1280
4V5G|1|BA|G|1281
4V5G|1|BA|U|1282
4V5G|1|BA|G|1283
4V5G|1|BA|A|1284
4V5G|1|BA|G|1285
4V5G|1|BA|A|1286
4V5G|1|BA|A|1287
4V5G|1|BA|U|1288
4V5G|1|BA|C|1289
4V5G|1|BA|C|1290
4V5G|1|BA|C|1291

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BR

50S RIBOSOMAL PROTEIN L17

Chain BW

50S RIBOSOMAL PROTEIN L22