HL_4V5G_249

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCGCAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5G_249 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2084

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4V5G|1|CA|C|896
4V5G|1|CA|C|897
4V5G|1|CA|G|898
4V5G|1|CA|C|899
4V5G|1|CA|A|900
4V5G|1|CA|A|901
4V5G|1|CA|G|902
4V5G|1|CA|G|903

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains

Chain CQ

30S RIBOSOMAL PROTEIN S17

Chain DA

Large subunit ribosomal RNA; LSU rRNA