HL_4V5H_008

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5H_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.185

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5H|1|AA|A|320
4V5H|1|AA|A|321
4V5H|1|AA|C|322
4V5H|1|AA|U|323
4V5H|1|AA|G|324
4V5H|1|AA|A|325
4V5H|1|AA|G|326
4V5H|1|AA|A|327
4V5H|1|AA|C|328
4V5H|1|AA|A|329
4V5H|1|AA|C|330
4V5H|1|AA|G|331
4V5H|1|AA|G|332
4V5H|1|AA|U|333

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AT

30S RIBOSOMAL PROTEIN S20