4V5H Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V5H_059 | 1/BB/744:753 | No text annotation | homologous HL_7A0S_022 HL_50204.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V5H_001 | No text annotation | ||
| HL_4V5H_002 | No text annotation | ||
| HL_4V5H_003 | GNRA | ||
| HL_4V5H_004 | GNRA | ||
| HL_4V5H_005 | UNCG | ||
| HL_4V5H_006 | GNRA related | ||
| HL_4V5H_007 | GNRA | ||
| HL_4V5H_008 | No text annotation | ||
| HL_4V5H_009 | UNCG | ||
| HL_4V5H_010 | GNRA | ||
| HL_4V5H_011 | UNCG | ||
| HL_4V5H_012 | No text annotation | ||
| HL_4V5H_013 | No text annotation | ||
| HL_4V5H_014 | GNRA-like with tWH | ||
| HL_4V5H_015 | No text annotation | ||
| HL_4V5H_016 | GNRA | ||
| HL_4V5H_017 | No text annotation | ||
| HL_4V5H_018 | No text annotation | ||
| HL_4V5H_019 | GNRA | ||
| HL_4V5H_020 | GNRA | ||
| HL_4V5H_021 | No text annotation | ||
| HL_4V5H_022 | GNRA | ||
| HL_4V5H_023 | No text annotation | ||
| HL_4V5H_024 | GNRA | ||
| HL_4V5H_025 | T-loop related | ||
| HL_4V5H_026 | No text annotation | ||
| HL_4V5H_027 | GNRA | ||
| HL_4V5H_028 | GNRA | ||
| HL_4V5H_029 | T-loop with 3 stacked bulged bases | ||
| HL_4V5H_030 | No text annotation | ||
| HL_4V5H_031 | UNCG | ||
| HL_4V5H_032 | GNRA | ||
| HL_4V5H_033 | No text annotation | ||
| HL_4V5H_107 | No text annotation | ||
| HL_4V5H_034 | tRNA anticodon loop | ||
| HL_4V5H_035 | T-loop with 2 stacked bulged bases | ||
| HL_4V5H_108 | No text annotation | ||
| HL_4V5H_036 | No text annotation | ||
| HL_4V5H_037 | Mini UNCG | ||
| HL_4V5H_038 | No text annotation | ||
| HL_4V5H_039 | No text annotation | ||
| HL_4V5H_040 | No text annotation | ||
| HL_4V5H_041 | UNCG | ||
| HL_4V5H_042 | No text annotation | ||
| HL_4V5H_043 | No text annotation | ||
| HL_4V5H_044 | No text annotation | ||
| HL_4V5H_045 | No text annotation | ||
| HL_4V5H_046 | T-loop with 2 stacked bulged bases | ||
| HL_4V5H_047 | No text annotation | ||
| HL_4V5H_048 | T-loop with unstacked turn | ||
| HL_4V5H_049 | No text annotation | ||
| HL_4V5H_050 | Pseudoknot geometry | ||
| HL_4V5H_051 | GNRA | ||
| HL_4V5H_052 | GNRA | ||
| HL_4V5H_053 | No text annotation | ||
| HL_4V5H_054 | T-loop with 2 stacked bulged bases | ||
| HL_4V5H_055 | No text annotation | ||
| HL_4V5H_056 | GNRA | ||
| HL_4V5H_057 | GNRA | ||
| HL_4V5H_058 | GNRA wlth tandem sheared | ||
| HL_4V5H_060 | No text annotation | ||
| HL_4V5H_061 | No text annotation | ||
| HL_4V5H_062 | No text annotation | ||
| HL_4V5H_063 | GNRA | ||
| HL_4V5H_064 | No text annotation | ||
| HL_4V5H_065 | No text annotation | ||
| HL_4V5H_066 | No text annotation | ||
| HL_4V5H_067 | No text annotation | ||
| HL_4V5H_068 | GNRA | ||
| HL_4V5H_069 | T-loop with 2 stacked bulged bases | ||
| HL_4V5H_070 | Pseudoknot geometry with 3' bulge | ||
| HL_4V5H_071 | GNRA | ||
| HL_4V5H_072 | No text annotation | ||
| HL_4V5H_073 | No text annotation | ||
| HL_4V5H_074 | Pseudoknot geometry with 3' bulge | ||
| HL_4V5H_075 | UNCG | ||
| HL_4V5H_076 | Mini UNCG | ||
| HL_4V5H_077 | No text annotation | ||
| HL_4V5H_078 | GNRA | ||
| HL_4V5H_079 | UNCG | ||
| HL_4V5H_080 | No text annotation | ||
| HL_4V5H_081 | No text annotation | ||
| HL_4V5H_082 | No text annotation | ||
| HL_4V5H_083 | No text annotation | ||
| HL_4V5H_084 | GNRA variation | ||
| HL_4V5H_085 | No text annotation | ||
| HL_4V5H_086 | No text annotation | ||
| HL_4V5H_087 | No text annotation | ||
| HL_4V5H_088 | No text annotation | ||
| HL_4V5H_089 | No text annotation | ||
| HL_4V5H_090 | No text annotation | ||
| HL_4V5H_091 | No text annotation | ||
| HL_4V5H_092 | No text annotation | ||
| HL_4V5H_093 | Pseudoknot geometry | ||
| HL_4V5H_094 | GNRA | ||
| HL_4V5H_095 | GNRA | ||
| HL_4V5H_096 | No text annotation | ||
| HL_4V5H_097 | No text annotation | ||
| HL_4V5H_098 | GNRA variation | ||
| HL_4V5H_099 | No text annotation | ||
| HL_4V5H_100 | GNRA | ||
| HL_4V5H_101 | GNRA | ||
| HL_4V5H_102 | Ribsomal LSU H95 | ||
| HL_4V5H_103 | No text annotation | ||
| HL_4V5H_104 | Mini UNCG | ||
| HL_4V5H_105 | No text annotation | ||
| HL_4V5H_106 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V5H_001 | Single bulged G | ||
| IL_4V5H_002 | Single bulged A | ||
| IL_4V5H_003 | No text annotation | ||
| IL_4V5H_004 | Minor groove platform | ||
| IL_4V5H_005 | Multiple bulged bases | ||
| IL_4V5H_006 | Minor groove platform with extra cWW | ||
| IL_4V5H_007 | Minor groove platform | ||
| IL_4V5H_008 | Stack outside cWW | ||
| IL_4V5H_009 | Isolated non-canonical cWW pair | ||
| IL_4V5H_010 | No text annotation | ||
| IL_4V5H_011 | Isolated cWH basepair | ||
| IL_4V5H_012 | tWH-tWH-tHW-tHW | ||
| IL_4V5H_013 | Minor groove platform | ||
| IL_4V5H_014 | Kink-turn with non-sequential stacking | ||
| IL_4V5H_015 | No text annotation | ||
| IL_4V5H_016 | C-loop | ||
| IL_4V5H_017 | Single bulged U | ||
| IL_4V5H_184 | No text annotation | ||
| IL_4V5H_018 | C-loop | ||
| IL_4V5H_019 | Single bulged G | ||
| IL_4V5H_020 | No text annotation | ||
| IL_4V5H_021 | No text annotation | ||
| IL_4V5H_022 | tSH-tHW-tWW | ||
| IL_4V5H_023 | No text annotation | ||
| IL_4V5H_024 | Single stack bend | ||
| IL_4V5H_025 | Single bulged A | ||
| IL_4V5H_026 | SSU/LSU pseudoknot | ||
| IL_4V5H_027 | Kink-turn related | ||
| IL_4V5H_028 | No text annotation | ||
| IL_4V5H_029 | tSH-tHW-tHS | ||
| IL_4V5H_030 | Major groove platform | ||
| IL_4V5H_031 | Major groove minor groove platform; mini C-loop | ||
| IL_4V5H_032 | No text annotation | ||
| IL_4V5H_033 | Major groove platform; stack outside cWW | ||
| IL_4V5H_034 | Single stack bend | ||
| IL_4V5H_035 | Tandem non-canonical cWW pairs | ||
| IL_4V5H_185 | Triple non-canonical cWW pairs | ||
| IL_4V5H_036 | No text annotation | ||
| IL_4V5H_037 | Kink-turn | ||
| IL_4V5H_186 | Kink-turn | ||
| IL_4V5H_038 | Left turn | ||
| IL_4V5H_039 | tSH-tHW-tHS | ||
| IL_4V5H_040 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V5H_041 | Single bulged A | ||
| IL_4V5H_042 | Single bulged G | ||
| IL_4V5H_043 | Minor groove platform | ||
| IL_4V5H_044 | Minor groove platform | ||
| IL_4V5H_045 | Minor groove platform | ||
| IL_4V5H_046 | Single stack bend | ||
| IL_4V5H_047 | Single bulged U | ||
| IL_4V5H_048 | Isolated cWS basepair | ||
| IL_4V5H_049 | Minor groove platform | ||
| IL_4V5H_050 | Single bulged A | ||
| IL_4V5H_051 | Isolated non-canonical cWW pair | ||
| IL_4V5H_052 | No text annotation | ||
| IL_4V5H_053 | Minor groove platform | ||
| IL_4V5H_054 | No text annotation | ||
| IL_4V5H_055 | No text annotation | ||
| IL_4V5H_056 | 180 degree turn | ||
| IL_4V5H_057 | Double sheared with non-canonical cWW | ||
| IL_4V5H_058 | No text annotation | ||
| IL_4V5H_187 | No text annotation | ||
| IL_4V5H_059 | No text annotation | ||
| IL_4V5H_060 | No text annotation | ||
| IL_4V5H_061 | Isolated non-canonical cWW pair | ||
| IL_4V5H_062 | Isolated non-canonical cWW pair | ||
| IL_4V5H_063 | Isolated non-canonical cWW pair | ||
| IL_4V5H_064 | Double sheared | ||
| IL_4V5H_065 | Triple sheared related | ||
| IL_4V5H_066 | Single bulged A | ||
| IL_4V5H_067 | No text annotation | ||
| IL_4V5H_068 | Self complementary | ||
| IL_4V5H_069 | Not an internal loop | ||
| IL_4V5H_070 | Not an internal loop | ||
| IL_4V5H_071 | Major groove intercalation | ||
| IL_4V5H_072 | No text annotation | ||
| IL_4V5H_188 | No text annotation | ||
| IL_4V5H_073 | No text annotation | ||
| IL_4V5H_074 | Symmetric double minor groove platform | ||
| IL_4V5H_075 | Bacterial 5S Loop E | ||
| IL_4V5H_076 | Triple sheared with non-canonical cWW | ||
| IL_4V5H_077 | Single bulged A | ||
| IL_4V5H_078 | Minor groove platform | ||
| IL_4V5H_079 | No text annotation | ||
| IL_4V5H_080 | Single stack bend | ||
| IL_4V5H_081 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V5H_082 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V5H_083 | No text annotation | ||
| IL_4V5H_084 | No text annotation | ||
| IL_4V5H_085 | No text annotation | ||
| IL_4V5H_086 | No text annotation | ||
| IL_4V5H_087 | Double sheared | ||
| IL_4V5H_088 | Isolated non-canonical cWW pair | ||
| IL_4V5H_089 | AAA cross-strand stack | ||
| IL_4V5H_090 | Isolated non-canonical cWW pair | ||
| IL_4V5H_091 | tHW-tHW cross-strand stack | ||
| IL_4V5H_092 | Single bulged A | ||
| IL_4V5H_093 | Single bulged G | ||
| IL_4V5H_094 | Triple sheared | ||
| IL_4V5H_095 | Major groove platform | ||
| IL_4V5H_096 | Multiple bulged bases | ||
| IL_4V5H_097 | No text annotation | ||
| IL_4V5H_098 | Single stack bend | ||
| IL_4V5H_099 | Isolated non-canonical cWW pair | ||
| IL_4V5H_100 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V5H_101 | Single bulged G | ||
| IL_4V5H_102 | C-loop with bulged stacked A's | ||
| IL_4V5H_103 | Isolated non-canonical cWW pair | ||
| IL_4V5H_104 | No text annotation | ||
| IL_4V5H_191 | No text annotation | ||
| IL_4V5H_105 | Isolated non-canonical cWW pair | ||
| IL_4V5H_106 | Single bulged C | ||
| IL_4V5H_107 | UAA/GAN | ||
| IL_4V5H_108 | SSU/LSU pseudoknot | ||
| IL_4V5H_109 | Single bulged U | ||
| IL_4V5H_110 | Kink-turn related | ||
| IL_4V5H_111 | No text annotation | ||
| IL_4V5H_112 | Isolated non-canonical cWW pair | ||
| IL_4V5H_113 | Tandem non-canonical cWW pairs | ||
| IL_4V5H_114 | Kink-turn | ||
| IL_4V5H_115 | No text annotation | ||
| IL_4V5H_116 | Major groove platform | ||
| IL_4V5H_117 | Isolated cWS basepair | ||
| IL_4V5H_118 | No text annotation | ||
| IL_4V5H_119 | Kink-turn | ||
| IL_4V5H_120 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V5H_121 | Major groove platform; stack outside cWW | ||
| IL_4V5H_122 | C-loop | ||
| IL_4V5H_123 | UAA/GAN | ||
| IL_4V5H_124 | tSH-tHW-tHS | ||
| IL_4V5H_125 | No text annotation | ||
| IL_4V5H_126 | UAA/GAN | ||
| IL_4V5H_127 | Tandem non-canonical cWW pairs | ||
| IL_4V5H_128 | No text annotation | ||
| IL_4V5H_129 | No text annotation | ||
| IL_4V5H_130 | tSH-tHW-tHS | ||
| IL_4V5H_131 | No text annotation | ||
| IL_4V5H_132 | Single bulged A | ||
| IL_4V5H_133 | UAA/GAN variation | ||
| IL_4V5H_134 | No text annotation | ||
| IL_4V5H_135 | Isolated tWW turn | ||
| IL_4V5H_136 | Major groove platform; stack outside cWW | ||
| IL_4V5H_189 | No text annotation | ||
| IL_4V5H_137 | Intercalated tWH | ||
| IL_4V5H_138 | tSH-tSH-tHH-tHS | ||
| IL_4V5H_139 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V5H_140 | Triple sheared | ||
| IL_4V5H_141 | Single bulged C | ||
| IL_4V5H_142 | Single bulged A | ||
| IL_4V5H_143 | Kink-turn related | ||
| IL_4V5H_144 | Minor groove platform, major groove intercalation | ||
| IL_4V5H_145 | Major groove intercalation | ||
| IL_4V5H_146 | Major groove minor groove platform; mini C-loop | ||
| IL_4V5H_147 | No text annotation | ||
| IL_4V5H_148 | UAA/GAN related | ||
| IL_4V5H_149 | Bulged stacked bases | ||
| IL_4V5H_150 | No text annotation | ||
| IL_4V5H_151 | Major groove platform | ||
| IL_4V5H_152 | No text annotation | ||
| IL_4V5H_153 | Single bulged U | ||
| IL_4V5H_154 | Minor groove platform | ||
| IL_4V5H_155 | Isolated tHS basepair with bulges | ||
| IL_4V5H_156 | Isolated non-canonical cWW pair | ||
| IL_4V5H_157 | No text annotation | ||
| IL_4V5H_158 | Isolated non-canonical cWW pair | ||
| IL_4V5H_159 | No text annotation | ||
| IL_4V5H_190 | No text annotation | ||
| IL_4V5H_160 | Single bulged U | ||
| IL_4V5H_161 | No text annotation | ||
| IL_4V5H_162 | Double sheared | ||
| IL_4V5H_163 | Major groove platform | ||
| IL_4V5H_164 | Single stack bend | ||
| IL_4V5H_165 | Major groove platform | ||
| IL_4V5H_166 | Major groove platform | ||
| IL_4V5H_167 | Major groove minor groove platform with extra cWW | ||
| IL_4V5H_168 | Double sheared with non-canonical cWW | ||
| IL_4V5H_169 | Major groove platform | ||
| IL_4V5H_170 | Isolated non-canonical cWW with bulges | ||
| IL_4V5H_171 | No text annotation | ||
| IL_4V5H_172 | Major groove platform with intercalation | ||
| IL_4V5H_173 | Single bulged A | ||
| IL_4V5H_174 | tSH-tHS-tHW | ||
| IL_4V5H_175 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V5H_176 | C-loop | ||
| IL_4V5H_177 | UAA/GAN related, with intercalation | ||
| IL_4V5H_178 | Multiple bulged bases | ||
| IL_4V5H_179 | UAA/GAN with extra cWW | ||
| IL_4V5H_180 | No text annotation | ||
| IL_4V5H_181 | Major groove intercalation | ||
| IL_4V5H_182 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V5H_183 | tHS double platform |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V5H_001 | No text annotation | ||
| J3_4V5H_028 | No text annotation | ||
| J3_4V5H_002 | No text annotation | ||
| J3_4V5H_029 | No text annotation | ||
| J3_4V5H_003 | No text annotation | ||
| J3_4V5H_004 | No text annotation | ||
| J3_4V5H_005 | No text annotation | ||
| J3_4V5H_006 | No text annotation | ||
| J3_4V5H_007 | No text annotation | ||
| J3_4V5H_008 | No text annotation | ||
| J3_4V5H_030 | No text annotation | ||
| J3_4V5H_009 | No text annotation | ||
| J3_4V5H_010 | No text annotation | ||
| J3_4V5H_037 | No text annotation | ||
| J3_4V5H_011 | No text annotation | ||
| J3_4V5H_012 | No text annotation | ||
| J3_4V5H_031 | No text annotation | ||
| J3_4V5H_013 | No text annotation | ||
| J3_4V5H_014 | No text annotation | ||
| J3_4V5H_015 | No text annotation | ||
| J3_4V5H_032 | No text annotation | ||
| J3_4V5H_033 | No text annotation | ||
| J3_4V5H_016 | No text annotation | ||
| J3_4V5H_017 | No text annotation | ||
| J3_4V5H_018 | No text annotation | ||
| J3_4V5H_019 | No text annotation | ||
| J3_4V5H_020 | No text annotation | ||
| J3_4V5H_021 | No text annotation | ||
| J3_4V5H_022 | No text annotation | ||
| J3_4V5H_034 | No text annotation | ||
| J3_4V5H_023 | Kink-turn 3-way junction | ||
| J3_4V5H_035 | No text annotation | ||
| J3_4V5H_024 | No text annotation | ||
| J3_4V5H_036 | No text annotation | ||
| J3_4V5H_025 | No text annotation | ||
| J3_4V5H_026 | No text annotation | ||
| J3_4V5H_027 | No text annotation | ||
| J4_4V5H_001 | No text annotation | ||
| J4_4V5H_016 | No text annotation | ||
| J4_4V5H_002 | No text annotation | ||
| J4_4V5H_003 | No text annotation | ||
| J4_4V5H_004 | tRNA junction | ||
| J4_4V5H_005 | No text annotation | ||
| J4_4V5H_006 | No text annotation | ||
| J4_4V5H_007 | No text annotation | ||
| J4_4V5H_008 | No text annotation | ||
| J4_4V5H_009 | No text annotation | ||
| J4_4V5H_010 | No text annotation | ||
| J4_4V5H_011 | No text annotation | ||
| J4_4V5H_012 | No text annotation | ||
| J4_4V5H_013 | No text annotation | ||
| J4_4V5H_014 | No text annotation | ||
| J4_4V5H_015 | No text annotation | ||
| J5_4V5H_001 | No text annotation | ||
| J5_4V5H_002 | No text annotation | ||
| J5_4V5H_003 | No text annotation | ||
| J5_4V5H_004 | No text annotation | ||
| J5_4V5H_005 | No text annotation | ||
| J5_4V5H_006 | No text annotation | ||
| J5_4V5H_007 | No text annotation | ||
| J5_4V5H_008 | No text annotation | ||
| J5_4V5H_009 | No text annotation | ||
| J6_4V5H_001 | No text annotation | ||
| J6_4V5H_002 | No text annotation | ||
| J7_4V5H_001 | No text annotation | ||
| J7_4V5H_002 | No text annotation |
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