HL_4V5H_035

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

G(5MU)UCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5H_035 not in the Motif Atlas

Homologous match to HL_3ZGZ_003

Geometric discrepancy: 0.2309

The information below is about HL_3ZGZ_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

4V5H|1|AV|G|53
4V5H|1|AV|5MU|54
4V5H|1|AV|U|55
4V5H|1|AV|C|56
4V5H|1|AV|A|57
4V5H|1|AV|A|58
4V5H|1|AV|A|59
4V5H|1|AV|U|60
4V5H|1|AV|C|61

Current chains

Chain AV

P-SITE TRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S RIBOSOMAL PROTEIN L5

Chain BM

50S RIBOSOMAL PROTEIN L16