HL_4V5H_070

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

4V5H|1|BB|U|1325, 4V5H|1|BB|U|1329

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5H_070 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.1275

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V5H|1|BB|G|1324
4V5H|1|BB|U|1325
4V5H|1|BB|U|1326
4V5H|1|BB|A|1327
4V5H|1|BB|A|1328
4V5H|1|BB|U|1329
4V5H|1|BB|C|1330

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BN

50S RIBOSOMAL PROTEIN L17

Chain BS

50S RIBOSOMAL PROTEIN L22