HL_4V5H_105

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

4V5H|1|BB|A|2820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5H_105 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1146

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V5H|1|BB|G|2819
4V5H|1|BB|A|2820
4V5H|1|BB|A|2821
4V5H|1|BB|G|2822
4V5H|1|BB|A|2823
4V5H|1|BB|C|2824
4V5H|1|BB|G|2825
4V5H|1|BB|A|2826
4V5H|1|BB|C|2827

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L3

Chain BN

50S RIBOSOMAL PROTEIN L17

Chain BP

50S RIBOSOMAL PROTEIN L19