HL_4V5J_079

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

4V5J|1|BA|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5J_079 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.0912

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

4V5J|1|BA|C|1631
4V5J|1|BA|A|1631|||A
4V5J|1|BA|A|1632
4V5J|1|BA|G|1633
4V5J|1|BA|A|1634
4V5J|1|BA|G|1635

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains