HL_4V5J_116
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5J_116 not in the Motif Atlas
- Homologous match to HL_5J7L_007
- Geometric discrepancy: 0.0761
- The information below is about HL_5J7L_007
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
4V5J|1|CA|U|296
4V5J|1|CA|G|297
4V5J|1|CA|A|298
4V5J|1|CA|G|299
4V5J|1|CA|A|300
4V5J|1|CA|G|301
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CD
- 30S RIBOSOMAL PROTEIN S4
- Chain CE
- 30S RIBOSOMAL PROTEIN S5
- Chain CL
- 30S RIBOSOMAL PROTEIN S12
- Chain CQ
- 30S RIBOSOMAL PROTEIN S17
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