HL_4V5J_141
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 4V5J|1|CV|C|17, 4V5J|1|CV|G|18, 4V5J|1|CV|G|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5J_141 not in the Motif Atlas
- Homologous match to HL_5HR6_001
- Geometric discrepancy: 0.5811
- The information below is about HL_5HR6_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78347.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V5J|1|CV|C|13
4V5J|1|CV|A|14
4V5J|1|CV|G|15
4V5J|1|CV|U|16
4V5J|1|CV|C|17
4V5J|1|CV|G|18
4V5J|1|CV|G|19
4V5J|1|CV|U|20
4V5J|1|CV|A|21
4V5J|1|CV|G|22
Current chains
- Chain CV
- E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S RIBOSOMAL PROTEIN L5
Coloring options: