HL_4V5J_221

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4V5J|1|AA|U|839, 4V5J|1|AA|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5J_221 not in the Motif Atlas

Geometric match to HL_8P9A_179

Geometric discrepancy: 0.3962

The information below is about HL_8P9A_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65256.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V5J|1|AA|G|837
4V5J|1|AA|G|838
4V5J|1|AA|U|839
4V5J|1|AA|C|840
4V5J|1|AA|U|841
4V5J|1|AA|C|848
4V5J|1|AA|C|849

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AR

30S RIBOSOMAL PROTEIN S18