Motif HL_65256.1 Version HL_65256.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8UO6_003 | 8UO6 | 0.6879 | 2 | A | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | A | 77 | A | 78 | U | 79 | U | 82 | U | 83 | cWW | |
| 2 | HL_8P9A_179 | 8P9A | 0.0000 | 2 | AR | LSU rRNA | C | 3193 | C | 3194 | U | 3196 | G | 3197 | G | 3199 | cWW | ncWW |
| 3 | HL_5WTI_001 | 5WTI | 0.3791 | 2 | B | RNA (123-MER) | C | 12 | U | 13 | U | 15 | U | 16 | G | 18 | cWW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUUAUU | 1 |
| CCUUGUG | 1 |
| CUUUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUAU | 1 |
| CUUGU | 1 |
| UUUUG | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.38 | Avg 0.42 | Max 0.83
Coloring options: