HL_4V5J_233
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGUAAUAGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5J_233 not in the Motif Atlas
- Homologous match to HL_5J7L_212
- Geometric discrepancy: 0.1562
- The information below is about HL_5J7L_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
4V5J|1|DA|G|1091
4V5J|1|DA|C|1092
4V5J|1|DA|G|1093
4V5J|1|DA|U|1094
4V5J|1|DA|A|1095
4V5J|1|DA|A|1096
4V5J|1|DA|U|1097
4V5J|1|DA|A|1098
4V5J|1|DA|G|1099
4V5J|1|DA|C|1100
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain CY
- PEPTIDE CHAIN RELEASE FACTOR 2
- Chain D9
- 50S RIBOSOMAL PROTEIN L36
- Chain DH
- 50S RIBOSOMAL PROTEIN L6
- Chain DK
- 50S RIBOSOMAL PROTEIN L11
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