HL_4V5K_021

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

4V5K|1|AA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5K_021 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.187

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5K|1|AA|G|963
4V5K|1|AA|A|964
4V5K|1|AA|A|965
4V5K|1|AA|G|966
4V5K|1|AA|C|967
4V5K|1|AA|A|968
4V5K|1|AA|A|969
4V5K|1|AA|C|970
4V5K|1|AA|G|971
4V5K|1|AA|C|972

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AJ

30S RIBOSOMAL PROTEIN S10

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain AV

Transfer RNA; tRNA

Chain AY

COLICIN-E3