HL_4V5K_033
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5K_033 not in the Motif Atlas
- Homologous match to HL_4V9Q_214
- Geometric discrepancy: 0.1013
- The information below is about HL_4V9Q_214
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V5K|1|AV|G|31
4V5K|1|AV|C|32
4V5K|1|AV|U|33
4V5K|1|AV|C|34
4V5K|1|AV|A|35
4V5K|1|AV|U|36
4V5K|1|AV|A|37
4V5K|1|AV|A|38
4V5K|1|AV|C|39
Current chains
- Chain AV
- E-SITE TRNA PHE OR P-SITE TRNA PHE
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S RIBOSOMAL PROTEIN S9
- Chain AW
- Transfer RNA; tRNA
- Chain AX
- MRNA
- Chain AY
- COLICIN-E3
Coloring options: