HL_4V5K_090

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V5K|1|BA|A|2268, 4V5K|1|BA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5K_090 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0721

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5K|1|BA|C|2264
4V5K|1|BA|U|2265
4V5K|1|BA|A|2266
4V5K|1|BA|A|2267
4V5K|1|BA|A|2268
4V5K|1|BA|A|2269
4V5K|1|BA|G|2270
4V5K|1|BA|G|2271
4V5K|1|BA|U|2272
4V5K|1|BA|A|2273
4V5K|1|BA|A|2274
4V5K|1|BA|C|2275
4V5K|1|BA|G|2276

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain BQ

50S RIBOSOMAL PROTEIN L16