HL_4V5K_112

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGCUUUGCC

Length

9 nucleotides

Bulged bases

4V5K|1|CA|U|202, 4V5K|1|CA|U|203, 4V5K|1|CA|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5K_112 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.5141

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

4V5K|1|CA|G|199
4V5K|1|CA|G|200
4V5K|1|CA|C|201
4V5K|1|CA|U|202
4V5K|1|CA|U|203
4V5K|1|CA|U|204
4V5K|1|CA|G|216
4V5K|1|CA|C|217
4V5K|1|CA|C|218

Current chains

Chain CA

16S ribosomal RNA

Nearby chains