HL_4V5K_133

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5K_133 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2697

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4V5K|1|CA|G|1164
4V5K|1|CA|C|1165
4V5K|1|CA|G|1166
4V5K|1|CA|A|1168
4V5K|1|CA|A|1169
4V5K|1|CA|A|1170
4V5K|1|CA|G|1171
4V5K|1|CA|C|1172

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S RIBOSOMAL PROTEIN S2

Chain CG

30S RIBOSOMAL PROTEIN S7