HL_4V5K_197

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

4V5K|1|DA|A|2311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5K_197 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1451

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V5K|1|DA|G|2302
4V5K|1|DA|G|2303
4V5K|1|DA|G|2304
4V5K|1|DA|A|2305
4V5K|1|DA|C|2306
4V5K|1|DA|G|2307
4V5K|1|DA|G|2308
4V5K|1|DA|A|2309
4V5K|1|DA|A|2310
4V5K|1|DA|A|2311
4V5K|1|DA|U|2312
4V5K|1|DA|C|2313
4V5K|1|DA|C|2314

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S RIBOSOMAL PROTEIN L5