HL_4V5K_219
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGUUCAAAUCCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5K_219 not in the Motif Atlas
- Homologous match to HL_5EL4_250
- Geometric discrepancy: 0.3931
- The information below is about HL_5EL4_250
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25222.2
- Basepair signature
- cWW-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V5K|1|AV|C|51
4V5K|1|AV|G|52
4V5K|1|AV|G|53
4V5K|1|AV|U|54
4V5K|1|AV|U|55
4V5K|1|AV|C|56
4V5K|1|AV|A|57
4V5K|1|AV|A|58
4V5K|1|AV|A|59
4V5K|1|AV|U|60
4V5K|1|AV|C|61
4V5K|1|AV|C|62
4V5K|1|AV|G|63
Current chains
- Chain AV
- E-SITE TRNA PHE OR P-SITE TRNA PHE
Nearby chains
- Chain B0
- 50S RIBOSOMAL PROTEIN L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S RIBOSOMAL PROTEIN L5
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
- Chain BZ
- 50S RIBOSOMAL PROTEIN L25
Coloring options: