HL_4V5K_230
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCGGAAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5K_230 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.2623
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V5K|1|CA|C|1514
4V5K|1|CA|C|1515
4V5K|1|CA|G|1516
4V5K|1|CA|G|1517
4V5K|1|CA|A|1518
4V5K|1|CA|A|1519
4V5K|1|CA|G|1520
4V5K|1|CA|G|1521
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: