HL_4V5L_038

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAA(H2U)(H2U)GG(H2U)AG

Length

10 nucleotides

Bulged bases

4V5L|1|AY|G|18, 4V5L|1|AY|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5L_038 not in the Motif Atlas

Homologous match to HL_6GSL_208

Geometric discrepancy: 0.2288

The information below is about HL_6GSL_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5L|1|AY|C|13
4V5L|1|AY|A|14
4V5L|1|AY|A|15
4V5L|1|AY|H2U|16
4V5L|1|AY|H2U|17
4V5L|1|AY|G|18
4V5L|1|AY|G|19
4V5L|1|AY|H2U|20
4V5L|1|AY|A|21
4V5L|1|AY|G|22

Current chains

Chain AY

A-SITE TRNA G24A TRP-TRNA TRP

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA