HL_4V5L_099

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5L_099 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3735

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5L|1|BA|G|2373
4V5L|1|BA|C|2374
4V5L|1|BA|G|2375
4V5L|1|BA|A|2376
4V5L|1|BA|A|2377
4V5L|1|BA|A|2378
4V5L|1|BA|G|2379
4V5L|1|BA|C|2380

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B6

50S RIBOSOMAL PROTEIN L33

Chain BS

50S RIBOSOMAL PROTEIN L18