HL_4V5L_105

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5L_105 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.1447

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4V5L|1|BA|C|2658
4V5L|1|BA|G|2659
4V5L|1|BA|A|2660
4V5L|1|BA|G|2661
4V5L|1|BA|A|2662
4V5L|1|BA|G|2663

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AZ

ELONGATION FACTOR TU

Chain BH

50S RIBOSOMAL PROTEIN L6