HL_4V5L_121

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5L_121 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2674

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4V5L|1|BA|C|1221|||A
4V5L|1|BA|C|1222
4V5L|1|BA|G|1223
4V5L|1|BA|C|1224
4V5L|1|BA|G|1225
4V5L|1|BA|A|1226
4V5L|1|BA|G|1227
4V5L|1|BA|G|1228

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BU

50S RIBOSOMAL PROTEIN L20

Chain BV

50S RIBOSOMAL PROTEIN L21