HL_4V5M_040

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V5M|1|BA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_040 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.1286

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5M|1|BA|G|194
4V5M|1|BA|A|195
4V5M|1|BA|A|196
4V5M|1|BA|A|197
4V5M|1|BA|C|198
4V5M|1|BA|A|199
4V5M|1|BA|U|200
4V5M|1|BA|C|201

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BP

50S RIBOSOMAL PROTEIN L15