4V5M Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V5M_001 | No text annotation | ||
| HL_4V5M_002 | No text annotation | ||
| HL_4V5M_119 | No text annotation | ||
| HL_4V5M_003 | GNRA | ||
| HL_4V5M_004 | No text annotation | ||
| HL_4V5M_005 | Mini UNCG | ||
| HL_4V5M_006 | GNRA related | ||
| HL_4V5M_007 | GNRA | ||
| HL_4V5M_008 | No text annotation | ||
| HL_4V5M_009 | UNCG | ||
| HL_4V5M_108 | GNRA with extra near cWW | ||
| HL_4V5M_010 | GNRA | ||
| HL_4V5M_011 | UNCG | ||
| HL_4V5M_109 | tRNA anticodon loop | ||
| HL_4V5M_012 | GNRA | ||
| HL_4V5M_013 | No text annotation | ||
| HL_4V5M_014 | GNRA-like with tWH | ||
| HL_4V5M_015 | No text annotation | ||
| HL_4V5M_016 | GNRA | ||
| HL_4V5M_017 | No text annotation | ||
| HL_4V5M_110 | No text annotation | ||
| HL_4V5M_018 | Mini UNCG | ||
| HL_4V5M_019 | GNRA | ||
| HL_4V5M_020 | GNRA | ||
| HL_4V5M_021 | No text annotation | ||
| HL_4V5M_022 | GNRA | ||
| HL_4V5M_023 | GNRA | ||
| HL_4V5M_024 | T-loop related | ||
| HL_4V5M_025 | No text annotation | ||
| HL_4V5M_026 | GNRA | ||
| HL_4V5M_027 | GNRA | ||
| HL_4V5M_028 | T-loop with 3 stacked bulged bases | ||
| HL_4V5M_029 | No text annotation | ||
| HL_4V5M_030 | tRNA D-loop | ||
| HL_4V5M_111 | UNCG | ||
| HL_4V5M_031 | GNRA | ||
| HL_4V5M_032 | tRNA D-loop | ||
| HL_4V5M_033 | tRNA anticodon loop | ||
| HL_4V5M_034 | T-loop with 2 stacked bulged bases | ||
| HL_4V5M_035 | No text annotation | ||
| HL_4V5M_036 | No text annotation | ||
| HL_4V5M_037 | No text annotation | ||
| HL_4V5M_038 | No text annotation | ||
| HL_4V5M_039 | No text annotation | ||
| HL_4V5M_040 | No text annotation | ||
| HL_4V5M_041 | No text annotation | ||
| HL_4V5M_042 | No text annotation | ||
| HL_4V5M_112 | No text annotation | ||
| HL_4V5M_043 | No text annotation | ||
| HL_4V5M_044 | No text annotation | ||
| HL_4V5M_045 | No text annotation | ||
| HL_4V5M_046 | T-loop with unstacked turn | ||
| HL_4V5M_047 | No text annotation | ||
| HL_4V5M_048 | No text annotation | ||
| HL_4V5M_049 | GNRA | ||
| HL_4V5M_113 | No text annotation | ||
| HL_4V5M_120 | GNRA with extra cWH | ||
| HL_4V5M_050 | GNRA | ||
| HL_4V5M_114 | tRNA D-loop | ||
| HL_4V5M_051 | No text annotation | ||
| HL_4V5M_052 | No text annotation | ||
| HL_4V5M_053 | No text annotation | ||
| HL_4V5M_054 | GNRA | ||
| HL_4V5M_055 | No text annotation | ||
| HL_4V5M_056 | No text annotation | ||
| HL_4V5M_057 | No text annotation | ||
| HL_4V5M_058 | UNCG variation | ||
| HL_4V5M_059 | No text annotation | ||
| HL_4V5M_060 | No text annotation | ||
| HL_4V5M_061 | GNRA | ||
| HL_4V5M_115 | No text annotation | ||
| HL_4V5M_062 | No text annotation | ||
| HL_4V5M_121 | No text annotation | ||
| HL_4V5M_116 | No text annotation | ||
| HL_4V5M_063 | No text annotation | ||
| HL_4V5M_117 | No text annotation | ||
| HL_4V5M_064 | GNRA wlth tandem sheared | ||
| HL_4V5M_065 | Externally structured | ||
| HL_4V5M_066 | GNRA | ||
| HL_4V5M_067 | No text annotation | ||
| HL_4V5M_068 | Pseudoknot geometry with 3' bulge | ||
| HL_4V5M_069 | GNRA | ||
| HL_4V5M_070 | No text annotation | ||
| HL_4V5M_071 | Pseudoknot | ||
| HL_4V5M_072 | No text annotation | ||
| HL_4V5M_073 | No text annotation | ||
| HL_4V5M_074 | No text annotation | ||
| HL_4V5M_075 | No text annotation | ||
| HL_4V5M_076 | No text annotation | ||
| HL_4V5M_077 | No text annotation | ||
| HL_4V5M_078 | No text annotation | ||
| HL_4V5M_079 | No text annotation | ||
| HL_4V5M_080 | No text annotation | ||
| HL_4V5M_081 | GNRA related | ||
| HL_4V5M_082 | GNRA | ||
| HL_4V5M_083 | No text annotation | ||
| HL_4V5M_084 | No text annotation | ||
| HL_4V5M_085 | No text annotation | ||
| HL_4V5M_086 | No text annotation | ||
| HL_4V5M_087 | UNCG | ||
| HL_4V5M_088 | No text annotation | ||
| HL_4V5M_089 | No text annotation | ||
| HL_4V5M_090 | No text annotation | ||
| HL_4V5M_091 | No text annotation | ||
| HL_4V5M_122 | No text annotation | ||
| HL_4V5M_092 | Pseudoknot geometry | ||
| HL_4V5M_093 | No text annotation | ||
| HL_4V5M_094 | GNRA | ||
| HL_4V5M_095 | No text annotation | ||
| HL_4V5M_096 | No text annotation | ||
| HL_4V5M_097 | No text annotation | ||
| HL_4V5M_098 | No text annotation | ||
| HL_4V5M_099 | GNRA | ||
| HL_4V5M_100 | GNRA | ||
| HL_4V5M_101 | No text annotation | ||
| HL_4V5M_102 | No text annotation | ||
| HL_4V5M_103 | No text annotation | ||
| HL_4V5M_104 | No text annotation | ||
| HL_4V5M_105 | GNRA | ||
| HL_4V5M_118 | No text annotation | ||
| HL_4V5M_106 | No text annotation | ||
| HL_4V5M_107 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V5M_001 | Single bulged G | ||
| IL_4V5M_002 | Single bulged A | ||
| IL_4V5M_003 | No text annotation | ||
| IL_4V5M_004 | Minor groove platform | ||
| IL_4V5M_005 | Multiple bulged bases | ||
| IL_4V5M_006 | Isolated non-canonical cWW pair | ||
| IL_4V5M_007 | Multiple bulged bases | ||
| IL_4V5M_008 | No text annotation | ||
| IL_4V5M_009 | tWH-tWH-tHW-tHW | ||
| IL_4V5M_010 | Isolated non-canonical cWW pair | ||
| IL_4V5M_011 | Kink-turn with non-sequential stacking | ||
| IL_4V5M_192 | No text annotation | ||
| IL_4V5M_012 | No text annotation | ||
| IL_4V5M_013 | C-loop | ||
| IL_4V5M_014 | Single bulged U | ||
| IL_4V5M_015 | C-loop | ||
| IL_4V5M_016 | Single bulged G | ||
| IL_4V5M_017 | No text annotation | ||
| IL_4V5M_018 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V5M_168 | No text annotation | ||
| IL_4V5M_019 | No text annotation | ||
| IL_4V5M_020 | SSU/LSU pseudoknot | ||
| IL_4V5M_021 | Kink-turn related | ||
| IL_4V5M_022 | No text annotation | ||
| IL_4V5M_023 | tSH-tHW-tHS | ||
| IL_4V5M_024 | Major groove platform | ||
| IL_4V5M_169 | No text annotation | ||
| IL_4V5M_025 | Major groove minor groove platform; mini C-loop | ||
| IL_4V5M_026 | No text annotation | ||
| IL_4V5M_027 | Major groove platform; stack outside cWW | ||
| IL_4V5M_028 | Major groove platform | ||
| IL_4V5M_029 | Tandem non-canonical cWW pairs | ||
| IL_4V5M_170 | Triple non-canonical cWW pairs | ||
| IL_4V5M_030 | No text annotation | ||
| IL_4V5M_031 | Kink-turn | ||
| IL_4V5M_032 | Left turn | ||
| IL_4V5M_033 | tSH-tHW-tHS | ||
| IL_4V5M_034 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V5M_035 | Single bulged A | ||
| IL_4V5M_036 | Single bulged G | ||
| IL_4V5M_037 | Minor groove platform | ||
| IL_4V5M_038 | Minor groove platform with extra cWW | ||
| IL_4V5M_039 | Minor groove platform | ||
| IL_4V5M_171 | No text annotation | ||
| IL_4V5M_172 | No text annotation | ||
| IL_4V5M_040 | Single bulged U | ||
| IL_4V5M_041 | Isolated cWS basepair | ||
| IL_4V5M_042 | Minor groove platform | ||
| IL_4V5M_043 | Single bulged U | ||
| IL_4V5M_044 | Isolated non-canonical cWW pair | ||
| IL_4V5M_045 | Minor groove platform | ||
| IL_4V5M_173 | No text annotation | ||
| IL_4V5M_046 | No text annotation | ||
| IL_4V5M_047 | No text annotation | ||
| IL_4V5M_174 | No text annotation | ||
| IL_4V5M_048 | Double sheared | ||
| IL_4V5M_049 | No text annotation | ||
| IL_4V5M_050 | No text annotation | ||
| IL_4V5M_051 | No text annotation | ||
| IL_4V5M_052 | Isolated non-canonical cWW pair | ||
| IL_4V5M_053 | Not an internal loop | ||
| IL_4V5M_054 | Isolated non-canonical cWW pair | ||
| IL_4V5M_055 | Double sheared | ||
| IL_4V5M_056 | UAA/GAN variation | ||
| IL_4V5M_057 | Isolated non-canonical cWW pair | ||
| IL_4V5M_058 | No text annotation | ||
| IL_4V5M_059 | Triple sheared with non-canonical cWW | ||
| IL_4V5M_060 | Single bulged A | ||
| IL_4V5M_061 | No text annotation | ||
| IL_4V5M_193 | Minor groove platform | ||
| IL_4V5M_062 | Kink-turn | ||
| IL_4V5M_063 | Single stack bend | ||
| IL_4V5M_064 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V5M_065 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V5M_175 | Major groove platform | ||
| IL_4V5M_066 | No text annotation | ||
| IL_4V5M_067 | No text annotation | ||
| IL_4V5M_194 | No text annotation | ||
| IL_4V5M_176 | No text annotation | ||
| IL_4V5M_068 | tSH-tHW | ||
| IL_4V5M_069 | Isolated tHS basepair with bulges | ||
| IL_4V5M_177 | No text annotation | ||
| IL_4V5M_178 | No text annotation | ||
| IL_4V5M_070 | No text annotation | ||
| IL_4V5M_071 | No text annotation | ||
| IL_4V5M_072 | No text annotation | ||
| IL_4V5M_073 | AAA cross-strand stack | ||
| IL_4V5M_074 | No text annotation | ||
| IL_4V5M_075 | tHW-tHW cross-strand stack | ||
| IL_4V5M_076 | Single bulged A | ||
| IL_4V5M_077 | Single bulged G | ||
| IL_4V5M_078 | Triple sheared | ||
| IL_4V5M_079 | Major groove platform with extra cWW | ||
| IL_4V5M_080 | Multiple bulged bases | ||
| IL_4V5M_081 | Single stack bend | ||
| IL_4V5M_082 | Intercalated cWW | ||
| IL_4V5M_179 | No text annotation | ||
| IL_4V5M_083 | No text annotation | ||
| IL_4V5M_084 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V5M_085 | Minor groove platform | ||
| IL_4V5M_086 | C-loop | ||
| IL_4V5M_087 | Isolated cWS basepair | ||
| IL_4V5M_088 | Double sheared with non-canonical cWW | ||
| IL_4V5M_089 | Single bulged A | ||
| IL_4V5M_180 | Tandem non-canonical cWW pairs | ||
| IL_4V5M_090 | No text annotation | ||
| IL_4V5M_091 | Single bulged C | ||
| IL_4V5M_092 | UAA/GAN | ||
| IL_4V5M_093 | SSU/LSU pseudoknot | ||
| IL_4V5M_094 | Single bulged U | ||
| IL_4V5M_095 | Kink-turn related | ||
| IL_4V5M_096 | No text annotation | ||
| IL_4V5M_097 | Isolated non-canonical cWW pair | ||
| IL_4V5M_098 | No text annotation | ||
| IL_4V5M_181 | No text annotation | ||
| IL_4V5M_099 | No text annotation | ||
| IL_4V5M_100 | Major groove platform with extra cWW | ||
| IL_4V5M_101 | Isolated cWS basepair | ||
| IL_4V5M_102 | No text annotation | ||
| IL_4V5M_103 | Kink-turn | ||
| IL_4V5M_104 | Single bulged A | ||
| IL_4V5M_105 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V5M_106 | Major groove platform; stack outside cWW | ||
| IL_4V5M_182 | No text annotation | ||
| IL_4V5M_107 | C-loop | ||
| IL_4V5M_108 | UAA/GAN | ||
| IL_4V5M_109 | tSH-tHW-tHS | ||
| IL_4V5M_183 | No text annotation | ||
| IL_4V5M_110 | No text annotation | ||
| IL_4V5M_111 | UAA/GAN | ||
| IL_4V5M_112 | Isolated tWW turn | ||
| IL_4V5M_113 | tSH-tHW | ||
| IL_4V5M_114 | Single stack bend | ||
| IL_4V5M_115 | UAA/GAN variation | ||
| IL_4V5M_116 | No text annotation | ||
| IL_4V5M_117 | Single bulged A | ||
| IL_4V5M_184 | Isolated non-canonical cWW pair | ||
| IL_4V5M_195 | No text annotation | ||
| IL_4V5M_118 | No text annotation | ||
| IL_4V5M_119 | No text annotation | ||
| IL_4V5M_185 | Isolated tWW turn | ||
| IL_4V5M_186 | Major groove platform; stack outside cWW | ||
| IL_4V5M_187 | No text annotation | ||
| IL_4V5M_188 | Intercalated tWH | ||
| IL_4V5M_120 | tSH-tSH-tHH-tHS | ||
| IL_4V5M_121 | Single bulged A | ||
| IL_4V5M_122 | Kink-turn related | ||
| IL_4V5M_123 | Minor groove platform, major groove intercalation | ||
| IL_4V5M_124 | Major groove intercalation | ||
| IL_4V5M_125 | Minor groove platform | ||
| IL_4V5M_126 | UAA/GAN with extra stack | ||
| IL_4V5M_127 | Triple sheared | ||
| IL_4V5M_128 | Bulged stacked bases | ||
| IL_4V5M_129 | No text annotation | ||
| IL_4V5M_130 | Major groove platform | ||
| IL_4V5M_131 | No text annotation | ||
| IL_4V5M_132 | Single bulged U | ||
| IL_4V5M_133 | Minor groove platform | ||
| IL_4V5M_134 | Isolated tHS basepair with bulges | ||
| IL_4V5M_135 | Isolated non-canonical cWW pair | ||
| IL_4V5M_136 | No text annotation | ||
| IL_4V5M_137 | No text annotation | ||
| IL_4V5M_138 | No text annotation | ||
| IL_4V5M_196 | Kink-turn | ||
| IL_4V5M_139 | Kink-turn | ||
| IL_4V5M_140 | Isolated tHS basepair with bulges | ||
| IL_4V5M_141 | Double sheared | ||
| IL_4V5M_142 | Major groove platform | ||
| IL_4V5M_143 | Single stack bend | ||
| IL_4V5M_144 | Major groove platform | ||
| IL_4V5M_145 | Major groove platform | ||
| IL_4V5M_146 | Major groove minor groove platform with extra cWW | ||
| IL_4V5M_147 | Triple sheared | ||
| IL_4V5M_148 | Major groove platform | ||
| IL_4V5M_149 | Isolated non-canonical cWW with bulges | ||
| IL_4V5M_150 | Multiple bulged bases | ||
| IL_4V5M_151 | Major groove platform with intercalation | ||
| IL_4V5M_152 | Single bulged A | ||
| IL_4V5M_153 | tSH-tHS-tHW | ||
| IL_4V5M_154 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V5M_155 | C-loop | ||
| IL_4V5M_156 | No text annotation | ||
| IL_4V5M_157 | Multiple bulged bases | ||
| IL_4V5M_158 | UAA/GAN with extra cWW | ||
| IL_4V5M_189 | No text annotation | ||
| IL_4V5M_159 | Single bulged C | ||
| IL_4V5M_160 | No text annotation | ||
| IL_4V5M_190 | No text annotation | ||
| IL_4V5M_161 | tHS double platform | ||
| IL_4V5M_162 | Major groove intercalation | ||
| IL_4V5M_197 | Isolated cWH basepair | ||
| IL_4V5M_163 | Tandem non-canonical cWW pairs | ||
| IL_4V5M_164 | No text annotation | ||
| IL_4V5M_191 | No text annotation | ||
| IL_4V5M_198 | Major groove minor groove platform; mini C-loop | ||
| IL_4V5M_165 | No text annotation | ||
| IL_4V5M_166 | Symmetric double minor groove platform | ||
| IL_4V5M_167 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V5M_001 | No text annotation | ||
| J3_4V5M_028 | No text annotation | ||
| J3_4V5M_002 | No text annotation | ||
| J3_4V5M_029 | No text annotation | ||
| J3_4V5M_003 | No text annotation | ||
| J3_4V5M_004 | No text annotation | ||
| J3_4V5M_005 | No text annotation | ||
| J3_4V5M_006 | No text annotation | ||
| J3_4V5M_007 | No text annotation | ||
| J3_4V5M_008 | No text annotation | ||
| J3_4V5M_030 | No text annotation | ||
| J3_4V5M_009 | No text annotation | ||
| J3_4V5M_010 | No text annotation | ||
| J3_4V5M_011 | No text annotation | ||
| J3_4V5M_012 | No text annotation | ||
| J3_4V5M_013 | No text annotation | ||
| J3_4V5M_031 | No text annotation | ||
| J3_4V5M_032 | No text annotation | ||
| J3_4V5M_014 | No text annotation | ||
| J3_4V5M_015 | No text annotation | ||
| J3_4V5M_033 | No text annotation | ||
| J3_4V5M_016 | No text annotation | ||
| J3_4V5M_034 | No text annotation | ||
| J3_4V5M_017 | No text annotation | ||
| J3_4V5M_018 | No text annotation | ||
| J3_4V5M_019 | No text annotation | ||
| J3_4V5M_020 | No text annotation | ||
| J3_4V5M_021 | No text annotation | ||
| J3_4V5M_035 | No text annotation | ||
| J3_4V5M_022 | No text annotation | ||
| J3_4V5M_036 | No text annotation | ||
| J3_4V5M_023 | No text annotation | ||
| J3_4V5M_037 | No text annotation | ||
| J3_4V5M_024 | No text annotation | ||
| J3_4V5M_025 | No text annotation | ||
| J3_4V5M_026 | No text annotation | ||
| J3_4V5M_027 | No text annotation | ||
| J4_4V5M_001 | No text annotation | ||
| J4_4V5M_002 | No text annotation | ||
| J4_4V5M_003 | No text annotation | ||
| J4_4V5M_004 | tRNA junction | ||
| J4_4V5M_005 | No text annotation | ||
| J4_4V5M_006 | No text annotation | ||
| J4_4V5M_007 | No text annotation | ||
| J4_4V5M_008 | No text annotation | ||
| J4_4V5M_009 | No text annotation | ||
| J4_4V5M_010 | No text annotation | ||
| J4_4V5M_011 | No text annotation | ||
| J4_4V5M_012 | No text annotation | ||
| J4_4V5M_013 | No text annotation | ||
| J4_4V5M_014 | No text annotation | ||
| J4_4V5M_015 | No text annotation | ||
| J5_4V5M_001 | No text annotation | ||
| J5_4V5M_002 | No text annotation | ||
| J5_4V5M_003 | No text annotation | ||
| J5_4V5M_010 | No text annotation | ||
| J5_4V5M_004 | No text annotation | ||
| J5_4V5M_005 | No text annotation | ||
| J5_4V5M_006 | No text annotation | ||
| J5_4V5M_007 | No text annotation | ||
| J5_4V5M_008 | No text annotation | ||
| J5_4V5M_009 | No text annotation | ||
| J6_4V5M_001 | No text annotation | ||
| J6_4V5M_002 | No text annotation | ||
| J7_4V5M_001 | No text annotation |
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