HL_4V5M_046

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4V5M|1|BA|G|329, 4V5M|1|BA|A|330, 4V5M|1|BA|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_046 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.1803

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4V5M|1|BA|G|327
4V5M|1|BA|U|328
4V5M|1|BA|G|329
4V5M|1|BA|A|330
4V5M|1|BA|A|331
4V5M|1|BA|A|332
4V5M|1|BA|G|333
4V5M|1|BA|C|334
4V5M|1|BA|C|335

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BY

50S RIBOSOMAL PROTEIN L24