3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
GGACGGAAAUC
Length
11 nucleotides
Bulged bases
4V5M|1|BA|A|2311
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5M_091 not in the Motif Atlas
Homologous match to HL_4WF9_051
Geometric discrepancy: 0.3765
The information below is about HL_4WF9_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5M|1|BA|G|2303
4V5M|1|BA|G|2304
4V5M|1|BA|A|2305
4V5M|1|BA|C|2306
4V5M|1|BA|G|2307
4V5M|1|BA|G|2308
4V5M|1|BA|A|2309
4V5M|1|BA|A|2310
4V5M|1|BA|A|2311
4V5M|1|BA|U|2312
4V5M|1|BA|C|2313

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain BG
50S RIBOSOMAL PROTEIN L5

Coloring options:


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