HL_4V5M_091

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

4V5M|1|BA|A|2311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_091 not in the Motif Atlas

Homologous match to HL_4WF9_051

Geometric discrepancy: 0.3765

The information below is about HL_4WF9_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5M|1|BA|G|2303
4V5M|1|BA|G|2304
4V5M|1|BA|A|2305
4V5M|1|BA|C|2306
4V5M|1|BA|G|2307
4V5M|1|BA|G|2308
4V5M|1|BA|A|2309
4V5M|1|BA|A|2310
4V5M|1|BA|A|2311
4V5M|1|BA|U|2312
4V5M|1|BA|C|2313

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BG

50S RIBOSOMAL PROTEIN L5