HL_4V5M_098

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_098 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.166

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5M|1|BA|C|2551
4V5M|1|BA|U|2552
4V5M|1|BA|G|2553
4V5M|1|BA|U|2554
4V5M|1|BA|U|2555
4V5M|1|BA|C|2556
4V5M|1|BA|G|2557

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains