HL_4V5M_107
3D structure
- PDB id
- 4V5M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.8 Å
Loop
- Sequence
- GGCGAC
- Length
- 6 nucleotides
- Bulged bases
- 4V5M|1|BB|C|88, 4V5M|1|BB|G|89
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5M_107 not in the Motif Atlas
- Homologous match to HL_7A0S_070
- Geometric discrepancy: 0.5177
- The information below is about HL_7A0S_070
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
4V5M|1|BB|G|86
4V5M|1|BB|G|87
4V5M|1|BB|C|88
4V5M|1|BB|G|89
4V5M|1|BB|A|90
4V5M|1|BB|C|91
Current chains
- Chain BB
- 5S RIBOSOMAL RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
- Chain BZ
- 50S RIBOSOMAL PROTEIN L25
Coloring options: