HL_4V5M_110

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4V5M|1|AA|U|839, 4V5M|1|AA|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_110 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3205

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V5M|1|AA|G|837
4V5M|1|AA|G|838
4V5M|1|AA|U|839
4V5M|1|AA|C|840
4V5M|1|AA|U|841
4V5M|1|AA|C|848
4V5M|1|AA|C|849

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AR

30S RIBOSOMAL PROTEIN S18