HL_4V5M_112

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

4V5M|1|BA|U|271|||K, 4V5M|1|BA|U|271|||L, 4V5M|1|BA|U|271|||N

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_112 not in the Motif Atlas

Homologous match to HL_4WF9_009

Geometric discrepancy: 0.3916

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V5M|1|BA|G|271|||I
4V5M|1|BA|C|271|||J
4V5M|1|BA|U|271|||K
4V5M|1|BA|U|271|||L
4V5M|1|BA|G|271|||M
4V5M|1|BA|U|271|||N
4V5M|1|BA|C|271|||O

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28