HL_4V5M_113

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CCCGGGAGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5M_113 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3484

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5M|1|BA|C|485
4V5M|1|BA|C|486
4V5M|1|BA|C|487
4V5M|1|BA|G|488
4V5M|1|BA|G|489
4V5M|1|BA|G|491
4V5M|1|BA|A|492
4V5M|1|BA|G|493
4V5M|1|BA|G|494
4V5M|1|BA|G|495

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BW

50S RIBOSOMAL PROTEIN L22

Chain BY

50S RIBOSOMAL PROTEIN L24